Index

A

accuracy_fit() (in module brainspy.utils.signal) add_input_transform() (brainspy.processors.dnpu.DNPU method) (brainspy.processors.modules.conv.DNPUConv2d method)

add_synchronisation_channels() (brainspy.processors.hardware.drivers.ni.tasks.IOTasksManager method) add_uniquely() (in module brainspy.processors.hardware.drivers.ni.channels) average_point_difference() (brainspy.processors.hardware.drivers.ni.setup.NationalInstrumentsSetup method)

B

brainspy module, [1], [2] brainspy.algorithms module, [1] brainspy.algorithms.ga module, [1] brainspy.algorithms.gd module, [1] brainspy.processors module, [1] brainspy.processors.dnpu module, [1] brainspy.processors.hardware module, [1] brainspy.processors.hardware.drivers module, [1] brainspy.processors.hardware.drivers.cdaq module, [1] brainspy.processors.hardware.drivers.ni module, [1] brainspy.processors.hardware.drivers.ni.channels module, [1] brainspy.processors.hardware.drivers.ni.setup module, [1] brainspy.processors.hardware.drivers.ni.tasks module, [1] brainspy.processors.hardware.drivers.nidaq module, [1] brainspy.processors.hardware.processor module, [1] brainspy.processors.modules module, [1] brainspy.processors.modules.bn module, [1]

brainspy.processors.modules.conv module, [1] brainspy.processors.processor module, [1] brainspy.processors.simulation module, [1] brainspy.processors.simulation.model module, [1] brainspy.processors.simulation.noise module, [1] brainspy.processors.simulation.noise.noise module, [1] brainspy.processors.simulation.processor module, [1] brainspy.utils module, [1] brainspy.utils.io module, [1] brainspy.utils.manager module, [1] brainspy.utils.performance module, [1] brainspy.utils.performance.accuracy module, [1] brainspy.utils.performance.data module, [1] brainspy.utils.pytorch module, [1] brainspy.utils.signal module, [1] brainspy.utils.transforms module, [1] brainspy.utils.waveform module, [1] build_model_structure() (brainspy.processors.simulation.model.NeuralNetworkModel method)

C

calculate_io_points() (brainspy.processors.hardware.drivers.ni.setup.NationalInstrumentsSetup method) CDAQtoCDAQ (class in brainspy.processors.hardware.drivers.cdaq) CDAQtoNiDAQ (class in brainspy.processors.hardware.drivers.nidaq) check_instruments() (brainspy.processors.hardware.drivers.ni.setup.NationalInstrumentsSetup method) check_values() (in module brainspy.utils.transforms) check_voltage_ranges() (brainspy.processors.hardware.drivers.ni.setup.NationalInstrumentsSetup method) clip_input_for() (brainspy.processors.dnpu.DNPU method) clip_input_vec() (brainspy.processors.dnpu.DNPU method) close() (brainspy.processors.dnpu.DNPU method) (brainspy.processors.hardware.processor.HardwareProcessor method) (brainspy.processors.processor.Processor method) (brainspy.processors.simulation.processor.SurrogateModel method)

close_tasks() (brainspy.processors.hardware.drivers.ni.setup.NationalInstrumentsSetup method) (brainspy.processors.hardware.drivers.ni.tasks.IOTasksManager method) concatenate_voltage_ranges() (in module brainspy.processors.hardware.drivers.ni.channels) constraint_control_voltages() (brainspy.processors.dnpu.DNPU method) corr_fit() (in module brainspy.utils.signal) corrsig() (in module brainspy.utils.signal) corrsig_fit() (in module brainspy.utils.signal) create_directory() (in module brainspy.utils.io) create_directory_timestamp() (in module brainspy.utils.io) crossover() (brainspy.algorithms.ga.GeneticOptimizer method) crossover_blxab() (brainspy.algorithms.ga.GeneticOptimizer method)

D

default_train_step() (in module brainspy.algorithms.gd) default_val_step() (in module brainspy.algorithms.gd) disable_os_signals() (brainspy.processors.hardware.drivers.ni.setup.NationalInstrumentsSetup method)

DNPU (class in brainspy.processors.dnpu) DNPUBatchNorm (class in brainspy.processors.modules.bn) DNPUConv2d (class in brainspy.processors.modules.conv)

E

enable_os_signals() (brainspy.processors.hardware.drivers.ni.setup.NationalInstrumentsSetup method)

evaluate_accuracy() (in module brainspy.utils.performance.accuracy) evaluate_population() (in module brainspy.algorithms.ga)

F

fisher() (in module brainspy.utils.signal) fisher_fit() (in module brainspy.utils.signal) force_cpu (brainspy.utils.pytorch.TorchUtils attribute) format() (brainspy.utils.pytorch.TorchUtils static method) format_targets() (brainspy.processors.dnpu.DNPU method) (brainspy.processors.processor.Processor method) forward() (brainspy.processors.dnpu.DNPU method) (brainspy.processors.hardware.processor.HardwareProcessor method) (brainspy.processors.modules.bn.DNPUBatchNorm method) (brainspy.processors.modules.conv.DNPUConv2d method) (brainspy.processors.processor.Processor method) (brainspy.processors.simulation.model.NeuralNetworkModel method) (brainspy.processors.simulation.processor.SurrogateModel method)

forward_for() (brainspy.processors.dnpu.DNPU method) forward_numpy() (brainspy.processors.hardware.drivers.cdaq.CDAQtoCDAQ method) (brainspy.processors.hardware.drivers.ni.setup.NationalInstrumentsSetup method) (brainspy.processors.hardware.drivers.nidaq.CDAQtoNiDAQ method) (brainspy.processors.hardware.processor.HardwareProcessor method) (brainspy.processors.simulation.processor.SurrogateModel method) forward_single() (brainspy.processors.dnpu.DNPU method) forward_vec() (brainspy.processors.dnpu.DNPU method)

G

GaussianNoise (class in brainspy.processors.simulation.noise.noise) generate_mask() (brainspy.utils.waveform.WaveformManager method) generate_mask_base() (brainspy.utils.waveform.WaveformManager method) GeneticOptimizer (class in brainspy.algorithms.ga) get_accuracy() (in module brainspy.utils.performance.accuracy) get_activation_electrode_no() (brainspy.processors.processor.Processor method) get_adam() (in module brainspy.utils.manager) get_algorithm() (in module brainspy.utils.manager) get_amplification_value() (brainspy.processors.hardware.drivers.ni.setup.NationalInstrumentsSetup method) get_clamped_intervals() (in module brainspy.utils.signal) get_clipping_value() (brainspy.processors.dnpu.DNPU method) (brainspy.processors.hardware.processor.HardwareProcessor method) (brainspy.processors.processor.Processor method) (brainspy.processors.simulation.processor.SurrogateModel method) get_control_electrode_no() (brainspy.processors.dnpu.DNPU method) get_control_ranges() (brainspy.processors.dnpu.DNPU method) get_control_voltages() (brainspy.processors.dnpu.DNPU method) get_criterion() (in module brainspy.utils.manager) get_data() (in module brainspy.utils.performance.data) get_data_input_electrode_no() (brainspy.processors.dnpu.DNPU method) get_default_node_configs() (in module brainspy.utils.performance.accuracy)

get_device() (brainspy.utils.pytorch.TorchUtils static method) get_driver() (in module brainspy.utils.manager) get_electrode_info() (in module brainspy.processors.processor) get_info_dict() (brainspy.processors.dnpu.DNPU method) get_input_ranges() (brainspy.processors.dnpu.DNPU method) get_key() (brainspy.processors.simulation.processor.SurrogateModel method) get_linear_transform_constants() (in module brainspy.utils.transforms) get_logged_variables() (brainspy.processors.modules.bn.DNPUBatchNorm method) get_mask() (in module brainspy.processors.hardware.drivers.ni.channels) get_node_input_data() (brainspy.processors.dnpu.DNPU method) get_node_no() (brainspy.processors.dnpu.DNPU method) get_noise() (in module brainspy.processors.simulation.noise.noise) get_offset() (in module brainspy.utils.transforms) get_optimizer() (in module brainspy.utils.manager) get_output_cut_value() (brainspy.processors.hardware.drivers.nidaq.CDAQtoNiDAQ method) get_output_dim() (brainspy.processors.modules.conv.DNPUConv2d method) get_readout_electrode_no() (brainspy.processors.processor.Processor method) get_scale() (in module brainspy.utils.transforms) get_voltage_ranges() (brainspy.processors.hardware.processor.HardwareProcessor method) (brainspy.processors.processor.Processor method) (brainspy.processors.simulation.processor.SurrogateModel method)

H

HardwareProcessor (class in brainspy.processors.hardware.processor)

hw_eval() (brainspy.processors.dnpu.DNPU method)

I

IncludeLoader (class in brainspy.utils.io) init_activation_channels() (brainspy.processors.hardware.drivers.ni.tasks.IOTasksManager method) (in module brainspy.processors.hardware.drivers.ni.channels) init_activation_electrode_no() (brainspy.processors.dnpu.DNPU method) init_channel_data() (in module brainspy.processors.hardware.drivers.ni.channels) init_configs() (brainspy.processors.hardware.drivers.ni.setup.NationalInstrumentsSetup method) init_electrode_info() (brainspy.processors.dnpu.DNPU method) init_params() (brainspy.processors.modules.conv.DNPUConv2d method) init_readout_channels() (brainspy.processors.hardware.drivers.ni.tasks.IOTasksManager method) (in module brainspy.processors.hardware.drivers.ni.channels) init_results() (in module brainspy.utils.performance.accuracy)

init_sampling_configs() (brainspy.processors.hardware.drivers.ni.setup.NationalInstrumentsSetup method) init_seed() (brainspy.utils.pytorch.TorchUtils static method) init_semaphore() (brainspy.processors.hardware.drivers.ni.setup.NationalInstrumentsSetup method) init_tasks() (brainspy.processors.hardware.drivers.ni.setup.NationalInstrumentsSetup method) (brainspy.processors.hardware.drivers.ni.tasks.IOTasksManager method) IOTasksManager (class in brainspy.processors.hardware.drivers.ni.tasks) is_device_name() (in module brainspy.processors.hardware.drivers.ni.channels) is_hardware() (brainspy.processors.dnpu.DNPU method) (brainspy.processors.hardware.drivers.ni.setup.NationalInstrumentsSetup method) (brainspy.processors.hardware.processor.HardwareProcessor method) (brainspy.processors.processor.Processor method) (brainspy.processors.simulation.processor.SurrogateModel method)

L

linear_rank() (brainspy.algorithms.ga.GeneticOptimizer method) linear_transform() (in module brainspy.utils.transforms)

load_configs() (in module brainspy.utils.io) load_processor() (brainspy.processors.processor.Processor method)

M

merge_electrode_data() (brainspy.processors.modules.conv.DNPUConv2d method) (in module brainspy.processors.dnpu) module brainspy, [1], [2] brainspy.algorithms, [1] brainspy.algorithms.ga, [1] brainspy.algorithms.gd, [1] brainspy.processors, [1] brainspy.processors.dnpu, [1] brainspy.processors.hardware, [1] brainspy.processors.hardware.drivers, [1] brainspy.processors.hardware.drivers.cdaq, [1] brainspy.processors.hardware.drivers.ni, [1] brainspy.processors.hardware.drivers.ni.channels, [1] brainspy.processors.hardware.drivers.ni.setup, [1] brainspy.processors.hardware.drivers.ni.tasks, [1] brainspy.processors.hardware.drivers.nidaq, [1] brainspy.processors.hardware.processor, [1] brainspy.processors.modules, [1] brainspy.processors.modules.bn, [1] brainspy.processors.modules.conv, [1] brainspy.processors.processor, [1] brainspy.processors.simulation, [1] brainspy.processors.simulation.model, [1] brainspy.processors.simulation.noise, [1] brainspy.processors.simulation.noise.noise, [1] brainspy.processors.simulation.processor, [1] brainspy.utils, [1] brainspy.utils.io, [1] brainspy.utils.manager, [1] brainspy.utils.performance, [1] brainspy.utils.performance.accuracy, [1] brainspy.utils.performance.data, [1] brainspy.utils.pytorch, [1] brainspy.utils.signal, [1] brainspy.utils.transforms, [1] brainspy.utils.waveform, [1]

mutation() (brainspy.algorithms.ga.GeneticOptimizer method)

N

NationalInstrumentsSetup (class in brainspy.processors.hardware.drivers.ni.setup)

NeuralNetworkModel (class in brainspy.processors.simulation.model)

O

os_signal_handler() (brainspy.processors.hardware.drivers.ni.setup.NationalInstrumentsSetup method)

P

pearsons_correlation() (in module brainspy.utils.signal) PerceptronDataset (class in brainspy.utils.performance.data) plateaus_to_points() (brainspy.utils.waveform.WaveformManager method) plateaus_to_waveform() (brainspy.utils.waveform.WaveformManager method) plot_perceptron() (in module brainspy.utils.performance.accuracy)

points_to_plateaus() (brainspy.utils.waveform.WaveformManager method) points_to_waveform() (brainspy.utils.waveform.WaveformManager method) postprocess() (brainspy.processors.modules.conv.DNPUConv2d method) preprocess() (brainspy.processors.modules.conv.DNPUConv2d method) process_output_data() (brainspy.processors.hardware.drivers.ni.setup.NationalInstrumentsSetup method) Processor (class in brainspy.processors.processor)

R

random() (in module brainspy.processors.dnpu) read() (brainspy.processors.hardware.drivers.ni.tasks.IOTasksManager method) read_data() (brainspy.processors.hardware.drivers.ni.setup.NationalInstrumentsSetup method) read_security_checks() (brainspy.processors.hardware.drivers.ni.setup.NationalInstrumentsSetup method)

readout_trial() (brainspy.processors.hardware.drivers.nidaq.CDAQtoNiDAQ method) regularizer() (brainspy.processors.dnpu.DNPU method) remove_duplicates() (brainspy.algorithms.ga.GeneticOptimizer method) remove_input_transform() (brainspy.processors.dnpu.DNPU method) reset() (brainspy.processors.dnpu.DNPU method)

S

sample_controls() (brainspy.processors.dnpu.DNPU method) save_configs() (in module brainspy.utils.io) set_amplification() (brainspy.processors.simulation.processor.SurrogateModel method) set_control_voltages() (brainspy.processors.dnpu.DNPU method) set_effects() (brainspy.processors.simulation.processor.SurrogateModel method) set_effects_from_dict() (brainspy.processors.simulation.processor.SurrogateModel method) set_force_cpu() (brainspy.utils.pytorch.TorchUtils static method) set_forward_pass() (brainspy.processors.dnpu.DNPU method) set_io_configs() (brainspy.processors.hardware.drivers.ni.setup.NationalInstrumentsSetup method) set_output_clipping() (brainspy.processors.simulation.processor.SurrogateModel method) set_sampling_frequencies() (brainspy.processors.hardware.drivers.ni.tasks.IOTasksManager method)

set_timeout() (brainspy.processors.hardware.drivers.ni.setup.NationalInstrumentsSetup method) set_voltage_ranges() (brainspy.processors.simulation.processor.SurrogateModel method) sigmoid_nn_distance() (in module brainspy.utils.signal) start_trigger() (brainspy.processors.hardware.drivers.ni.tasks.IOTasksManager method) step() (brainspy.algorithms.ga.GeneticOptimizer method) stop_tasks() (brainspy.processors.hardware.drivers.ni.tasks.IOTasksManager method) structure_consistency_check() (brainspy.processors.simulation.model.NeuralNetworkModel method) SurrogateModel (class in brainspy.processors.simulation.processor) sw_train() (brainspy.processors.dnpu.DNPU method) swap() (brainspy.processors.processor.Processor method) synchronise_input_data() (brainspy.processors.hardware.drivers.nidaq.CDAQtoNiDAQ method) synchronise_output_data() (brainspy.processors.hardware.drivers.nidaq.CDAQtoNiDAQ method)

T

to_numpy() (brainspy.utils.pytorch.TorchUtils static method) TorchUtils (class in brainspy.utils.pytorch) train() (in module brainspy.algorithms.ga) (in module brainspy.algorithms.gd) train_checks() (in module brainspy.algorithms.gd) train_perceptron() (in module brainspy.utils.performance.accuracy) training (brainspy.processors.dnpu.DNPU attribute) (brainspy.processors.hardware.processor.HardwareProcessor attribute) (brainspy.processors.modules.bn.DNPUBatchNorm attribute) (brainspy.processors.modules.conv.DNPUConv2d attribute) (brainspy.processors.processor.Processor attribute) (brainspy.processors.simulation.model.NeuralNetworkModel attribute) (brainspy.processors.simulation.processor.SurrogateModel attribute)

type_check() (brainspy.processors.hardware.drivers.ni.setup.NationalInstrumentsSetup method) (in module brainspy.processors.hardware.drivers.ni.channels)

U

universal_sampling() (brainspy.algorithms.ga.GeneticOptimizer method)

update_mutation_rate() (brainspy.algorithms.ga.GeneticOptimizer method)

W

waveform_to_plateaus() (brainspy.utils.waveform.WaveformManager method) waveform_to_points() (brainspy.utils.waveform.WaveformManager method)

WaveformManager (class in brainspy.utils.waveform) write() (brainspy.processors.hardware.drivers.ni.tasks.IOTasksManager method)

Z

zscore_norm() (in module brainspy.utils.performance.accuracy)